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A program isn't just a program: in order to work properly, the context in which it runs — system libraries, configuration files, other programs it might need to help it such as databases or web servers, etc. — needs to be correct. Getting that stuff figured out well enough that end users can easily get it working on random different Linux distributions with arbitrary other software installed is hard, so developers eventually resorted to getting it working on their one (virtual) machine and then just (virtually) shipping that whole machine.
But why can I "just install a program" on my windows machine or on my phone and it is that easy?
Caveat: I am not a programmer, just an enthusiast. Windows programs typically package all of the dependency libraries up with each individual program in the form of DLLs (dynamic link library). If two programs both require the same dependency they just both have a local copy in their directory.