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I'm sorry. For some reason we're completely talking past each other... Your harddisk/ssd/usb-stick is a document based database afaik. You store data in form of files/documents on your HDD. It's a bit like a library, yes. Those documents are organzed a certain way. In folders... maybe on shelves or whatever the digital equivalent is...
The important parts of a wiki (the articles with the interesting information in them) are organized exactly the same way. That's why DokuWiki manages to pull it off without a relational database. It really doesn't matter for something like an encyclopedia or knowledge database. Can be articles in a books sitting on shelves in some building. Or digital files on a server, organized by a very similar hierarchy / topics. ...And because that's a subset of what a relational database can do, you can use them as well! (Edit: Not sure if my terminology is 100% correct... we also have the word: hierarchical databases? could also be what I mean.)
...Sorry for the AI confusion on my side...