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For the OCR process you can probably wrangle up a simple bash pipeline with ocrmypdf and just let it run in the background once until all your PDFs have a text layer.
With that tool it should be doable with something like a simple while loop:
If you need additional languages or other options you'll have to delve a little deeper into the ocrmypdf documentation but this should be enough duct tape to just whip up a full OCR cycle.
That's a neat little tool that seems to work pretty well. Turns out the files I thought I'd need it for already have embedded OCR data, so I didn't end up needing it. Definitely one I'll keep in mind for the future though.